Matthew R Pocock: search on Z-Library

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1

Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization

Misirli, Goksel, Cavaliere, Matteo, Waites, William, Pocock, Matthew, Madsen, Curtis, Gilfellon, Owen, Honorato-Zimmer, Ricardo, Zuliani, Paolo, Danos, Vincent, Wipat, Anil

Journal:

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

2

Remote Detection of Growth Dynamics in Red Lettuce Using a Novel Chlorophyll a Fluorometer

Urschel, Matthew, Pocock, Tessa

Journal:

Year:

2018

Language:

english

File:

PDF, 8.07 MB

english, 2018

3

Incorporating Sustainability and Green Engineering into a Constrained Civil Engineering Curriculum

Christ, John A., Heiderscheidt, Jeffrey L., Pickenpaugh, Monica Y., Phelan, Thomas J., Pocock, James B., Stanford, Matthew S., Seely, Gregory E., Suermann, Patrick C., Twesme, Troy M.

Journal:

Journal of Professional Issues in Engineering Education and Practice

Year:

2015

Language:

english

File:

PDF, 753 KB

english, 2015

4

276

Brown, Matthew, Munoz, Peter, Hunting, John, Sambuco, Bruno, Farrar, Katherine, Vucelik, Randall, Yamane, David, Rajamarthandan, Siva, Pocock, Elizabeth, Najam, Farzad, Seneff, Michael

Journal:

Critical Care Medicine

Year:

2020

File:

PDF, 60 KB

2020

5

libSBOLj 2.0: A Java Library to Support SBOL 2.0

Zhang, Zhen, Nguyen, Tramy, Roehner, Nicholas, Misirli, Goksel, Pocock, Matthew, Oberortner, Ernst, Samineni, Meher, Zundel, Zach, Beal, Jacob, Clancy, Kevin, Wipat, Anil, Myers, Chris J.

Journal:

IEEE Life Sciences Letters

Year:

2016

Language:

english

File:

PDF, 252 KB

english, 2016

6

Sharing Structure and Function in Biological Design with SBOL 2.0

Roehner, Nicholas, Beal, Jacob, Clancy, Kevin, Bartley, Bryan, Misirli, Goksel, Grünberg, Raik, Oberortner, Ernst, Pocock, Matthew, Bissell, Michael, Madsen, Curtis, Nguyen, Tramy, Zhang, Michael, Zha

Journal:

ACS Synthetic Biology

Year:

2016

Language:

english

File:

PDF, 2.16 MB

english, 2016

7

Analysis and visualisation of RDF resources in Ondex

Canevet, Catherine, Lysenko, Artem, Splendiani, Andrea, Pocock, Matthew, Rawlings, Chris

Journal:

Bioentrepreneur

Year:

2010

Language:

english

File:

PDF, 2.00 MB

english, 2010

8

A comparison of bivalirudin and heparin for patients on extracorporeal membrane oxygenation

Brown, Matthew A., Najam, Farzad, Pocock, Elizabeth S., Munoz, Peter F., Farrar, Katherine A., Yamane, David P.

Journal:

Thrombosis Research

Year:

2020

File:

PDF, 693 KB

2020

9

The diagnostic role of dual femur bone density measurement in low-impact fractures

Joseph C. H. Wong, Louise McEwan, Naomi Lee, Matthew R. Griffiths, Nicholas A. Pocock

Journal:

Osteoporosis International

Year:

2003

Language:

english

File:

PDF, 245 KB

english, 2003

10

libSBOLj 2.0: A Java Library to Support SBOL 2.0

Zhang, Zhen, Nguyen, Tramy, Roehner, Nicholas, Misirli, Goksel, Pocock, Matthew, Oberortner, Ernst, Samineni, Meher, Zundel, Zach, Beal, Jacob, Clancy, Kevin, Wipat, Anil, Myers, Chris J.

Journal:

IEEE Life Sciences Letters

Year:

2016

Language:

english

File:

PDF, 249 KB

english, 2016

11

Synthetic Biology Open Language (SBOL) Version 2.0.0

Bartley, Bryan, Beal, Jacob, Clancy, Kevin, Misirli, Goksel, Roehner, Nicholas, Oberortner, Ernst, Pocock, Matthew, Bissell, Michael, Madsen, Curtis, Nguyen, Tramy, Zhang, Zhen, Gennari, John H., Myer

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.65 MB

english, 2015

12

Ontology for genome comparison and genomic rearrangements

Keith Flanagan, Robert Stevens, Matthew Pocock, Pete Lee, Anil Wipat

Journal:

Comparative and Functional Genomics

Year:

2004

Language:

english

File:

PDF, 141 KB

english, 2004

13

Data Integration and Mining for Synthetic Biology Design

Misirli, Goksel, Hallinan, Jennifer, Pocock, Matthew, Lord, Phillip, McLaughlin, James Alastair, Sauro, Herbert, Wipat, Anil

Journal:

ACS Synthetic Biology

Year:

2016

Language:

english

File:

PDF, 1002 KB

english, 2016

14

Constructing synthetic biology workflows in the cloud

Mısırlı, Göksel, Madsen, Curtis, de Murieta, Iñaki Sainz, Bultelle, Matthieu, Flanagan, Keith, Pocock, Matthew, Hallinan, Jennifer, McLaughlin, James Alastair, Clark-Casey, Justin, Lyne, Mike, Micklem

Journal:

Engineering Biology

Year:

2017

Language:

english

File:

PDF, 299 KB

english, 2017

15

Annotation of SBML Models Through Rule-Based Semantic Integration

Lister, Allyson, Lord, Phillip, Pocock, Matthew, Wipat, Anil

Journal:

Nature Precedings

Year:

2009

Language:

english

File:

PDF, 194 KB

english, 2009

16

The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs

Madsen, Curtis, McLaughlin, James Alastair, Mısırlı, Göksel, Pocock, Matthew, Flanagan, Keith, Hallinan, Jennifer, Wipat, Anil

Journal:

ACS Synthetic Biology

Year:

2016

Language:

english

File:

PDF, 2.28 MB

english, 2016

17

Nasal Carriage of Methicillin‐ResistantStaphylococcus aureusin an American Indian Population •

Richard Leman, MD, Francisco Alvarado‐Ramy, MD, Sean Pocock, Neil Barg, MD, Molly Kellum, BS, Sigrid McAllister, BS, MT (ASCP), James Cheek, MD, MPH, Matthew Kuehnert, MD

Journal:

Infection Control and Hospital Epidemiology

Year:

2004

Language:

english

File:

PDF, 134 KB

english, 2004

18

Human Cytomegalovirus Delays Neutrophil Apoptosis and Stimulates the Release of a Prosurvival Secretome

Pocock, Joanna M., Storisteanu, Daniel M. L., Reeves, Matthew B., Juss, Jatinder K., Wills, Mark R., Cowburn, Andrew S., Chilvers, Edwin R.

Journal:

Frontiers in Immunology

Year:

2017

Language:

english

File:

PDF, 6.69 MB

english, 2017

19

Longitudinal Changes in Insulin Resistance in Normal Weight, Overweight and Obese Individuals

Tang, Alice, Coster, Adelle C. F., Tonks, Katherine T., Heilbronn, Leonie K., Pocock, Nicholas, Purtell, Louise, Govendir, Matthew, Blythe, Jackson, Zhang, Jialiang, Xu, Aimin, Chisholm, Donald J., Jo

Journal:

Journal of Clinical Medicine

Year:

2019

Language:

english

File:

PDF, 2.07 MB

english, 2019

20

Longitudinal Changes in Insulin Resistance in Normal Weight, Overweight and Obese Individuals

Tang, Alice, Coster, Adelle C. F., Tonks, Katherine T., Heilbronn, Leonie K., Pocock, Nicholas, Purtell, Louise, Govendir, Matthew, Blythe, Jackson, Zhang, Jialiang, Xu, Aimin, Chisholm, Donald J., Jo

Journal:

Journal of Clinical Medicine

Year:

2019

File:

PDF, 2.07 MB

2019

21

Analysis and visualisation of RDF resources in Ondex

Canevet, Catherine, Lysenko, Artem, Splendiani, Andrea, Pocock, Matthew, Rawlings, Chris

Journal:

Bioentrepreneur

Year:

2010

File:

PDF, 2.00 MB

2010

22

Can somatic GATA2 mutation mimic germ line GATA2 mutation?

Sekhar, Mallika, Pocock, Rachael, Lowe, David, Mitchell, Christopher, Marafioti, Teresa, Dickinson, Rachel, Collin, Matthew, Lipman, Marc

Journal:

Year:

2018

File:

PDF, 1.18 MB

2018

23

Microbase2.0: A Generic Framework for Computationally Intensive Bioinformatics Workflows in the Cloud

Flanagan, Keith, Nakjang, Sirintra, Hallinan, Jennifer, Harwood, Colin, Hirt, Robert P., Pocock, Matthew R., Wipat, Anil

Journal:

Journal of Integrative Bioinformatics

Year:

2012

Language:

english

File:

PDF, 844 KB

english, 2012

24

An integrated dataset for in silico drug discovery

Cockell, Simon J, Weile, Jochen, Lord, Phillip, Wipat, Claire, Andriychenko, Dmytro, Pocock, Matthew, Wilkinson, Darren, Young, Malcolm, Wipat, Anil

Journal:

Journal of Integrative Bioinformatics

Year:

2010

Language:

english

File:

PDF, 931 KB

english, 2010

25

Taverna: lessons in creating a workflow environment for the life sciences

Tom Oinn, Mark Greenwood, Matthew Addis, M. Nedim Alpdemir, Justin Ferris, Kevin Glover, Carole Goble, Antoon Goderis, Duncan Hull, Darren Marvin, Peter Li, Phillip Lord, Matthew R. Pocock, Martin Sen

Journal:

Concurrency and Computation: Practice and Experience

Year:

2006

Language:

english

File:

PDF, 766 KB

english, 2006

26

Modeling and Managing Experimental Data Using FuGE

Jones, Andrew R., Lister, Allyson L., Hermida, Leandro, Wilkinson, Peter, Eisenacher, Martin, Belhajjame, Khalid, Gibson, Frank, Lord, Phil, Pocock, Matthew, Rosenfelder, Heiko, Santoyo-Lopez, Javier,

Journal:

Omics A Journal of Integrative Biology

Year:

2009

Language:

english

File:

PDF, 1.91 MB

english, 2009

27

Annotation of SBML Models Through Rule-Based Semantic Integration

Lister, Allyson, Lord, Phillip, Pocock, Matthew, Wipat, Anil

Journal:

Nature Precedings

Year:

2009

File:

PDF, 194 KB

2009

28

Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data

Peter Li, Juan I Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew R Pocock, Carole A Goble, Stephen G Oliver, Douglas B Kell

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 850 KB

english, 2008

29

[IEEE 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) - Nashville, TN, USA (2009.03.30-2009.04.2)] 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology - Clustering incorporating shortest paths identifies relevant modules in functional interaction networks

Hallinan, Jennifer, Pocock, Matthew, Addinall, Stephen, Lydall, David A, Wipat, Anil

Year:

2009

Language:

english

File:

PDF, 657 KB

english, 2009

30

Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models

Lister, Allyson L., Pocock, Matthew, Wipat, Anil

Journal:

Journal of Integrative Bioinformatics

Year:

2007

Language:

english

File:

PDF, 374 KB

english, 2007

31

Proposed Data Model for the Next Version of the Synthetic Biology Open Language

Roehner, Nicholas, Oberortner, Ernst, Pocock, Matthew, Beal, Jacob, Clancy, Kevin, Madsen, Curtis, Misirli, Goksel, Wipat, Anil, Sauro, Herbert, Myers, Chris J.

Journal:

ACS Synthetic Biology

Year:

2015

Language:

english

File:

PDF, 727 KB

english, 2015

32

Specifying Combinatorial Designs with the Synthetic Biology Open Language (SBOL)

Roehner, Nicholas, Bartley, Bryan, Beal, Jacob, McLaughlin, James, Pocock, Matthew, Zhang, Michael, Zundel, Zach, Myers, Chris J.

Journal:

ACS Synthetic Biology

Year:

2019

Language:

english

File:

PDF, 1.24 MB

english, 2019

33

BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology

Misirli, Goksel, Wipat, Anil, Mullen, Joseph, James, Katherine, Pocock, Matthew, Smith, Wendy, Allenby, Nick, Hallinan, Jennifer S.

Journal:

Journal of Integrative Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

34

Annotation of SBML models through rule-based semantic integration

Allyson L Lister, Phillip Lord, Matthew Pocock, Anil Wipat

Journal:

Journal of Biomedical Semantics

Year:

2010

Language:

english

File:

PDF, 1.47 MB

english, 2010

35

The differential gene expression profiles of proximal and distal muscle groups are altered in pre-pathological dysferlin-deficient mice

Maja von der Hagen, Steven H. Laval, Lynsey M. Cree, Faye Haldane, Matthew Pocock, Ilka Wappler, Heiko Peters, Herbert A. Reitsamer, Harald Hoger, Maria Wiedner, Felicitas Oberndorfer, Louise V.B. And

Journal:

Neuromuscular Disorders

Year:

2005

Language:

english

File:

PDF, 386 KB

english, 2005

36

474

Brown, Matthew, Najam, Farzad, Munoz, Peter, Farrar, Katherine, Pocock, Elizabeth, Hinchey, Danielle, Lee, Hyun, Shaykhinurov, Eduard, Yamane, David

Journal:

Critical Care Medicine

Year:

2019

File:

PDF, 71 KB

2019

37

ShortBOL: A language for scripting designs for engineered biological systems using SyntheticBiology Open Language (SBOL)

Crowther, Matthew, Grozinger, Lewis, Pocock, Matthew, Taylor, Christopher P.D., McLaughlin, James A., Misirli, Goksel, Bartley, Bryan, Beal, Jacob, Goni-Moreno, Angel, Wipat, Anil

Journal:

ACS Synthetic Biology

Year:

2020

File:

PDF, 445 KB

2020

38

VisBOL: Web-based tools for synthetic biology design visualization

McLaughlin, James Alastair, Pocock, Matthew, Misirli, Goksel, Madsen, Curtis, Wipat, Anil

Journal:

ACS Synthetic Biology

Year:

2016

Language:

english

File:

PDF, 548 KB

english, 2016

39

475

Brown, Matthew, Najam, Farzad, Pocock, Elizabeth, Munoz, Peter, Farrar, Katherine, Hinchey, Danielle, Lee, Hyun, Shaykhinurov, Eduard, Yamane, David

Journal:

Critical Care Medicine

Year:

2019

File:

PDF, 50 KB

2019

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